PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 223aa    MW: 23970 Da    PI: 7.0915
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739850genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-0586108123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ CgksF++   L  H  +H
  676739850  86 YKCSVCGKSFPSYQALGGHKTSH 108
                9***********99998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.2E-484109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.84E-1085108No hitNo description
PfamPF139121.4E-1486110IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.78386113IPR007087Zinc finger, C2H2
SMARTSM003550.002286108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SuperFamilySSF576675.84E-10147174No hitNo description
PfamPF139124.6E-12151176IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12152174IPR007087Zinc finger, C2H2
SMARTSM003550.35152174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MALDTLNSPT STPTAPPPFL TEPENLESWT KRKRTKRHRL IDQSNPPSEE EYLALCLLML  60
ARGSSDDDHH SPPPPTPPSD HHQRDYKCSV CGKSFPSYQA LGGHKTSHRK PVSNNNNNNN  120
NDDGNNNSSG NGSVTNNGNI SNGLSGQSGK THKCSICFKS FPSGQALGGH KRCHYDGGNG  180
NGNGSSSNHG FDLNLPADQV MEAFSDETLG KSQLSGEETK SVL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596326.11e-110PREDICTED: LOW QUALITY PROTEIN: zinc finger protein AZF1
SwissprotQ9SSW19e-66AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A078BXM71e-112A0A078BXM7_BRANA; BnaC01g26370D protein
STRINGBra012914.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.14e-74C2H2 family protein